ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4qf5B2 - ECOD Domain | ECOD

ECOD/Domains/e4qf5B2

e4qf5B2

UID: 001519099

PDB

Range: B:113-323
PDB: 4QF5 chain B(all domains)
UniProt: B7GVN5 (all domains)

Molecule: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

ATPATP
drugDrugBank DB00171
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 4QF5 RCSB PDB: 4QF5 PDBe: 4QF5 UniProt: B7GVN5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure