ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3t11A1 - ECOD Domain | ECOD

ECOD/Domains/e3t11A1

e3t11A1

UID: 000151920

PDB

Range: A:1-99
PDB: 3T11 chain A(all domains)
UniProt: P03367 (all domains)
Gene: gag-pol

Molecule: HIV-1 Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
(3S,11S)-11-(3-chloro-4-hydroxy-5-methoxyphenyl)-3-phenyl-2,3,4,5,10,11-hexahydro-1H-dibenzo[b,e][1,4]diazepin-1-one3T1
Chloride ion

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3T11 RCSB PDB: 3T11 PDBe: 3T11 UniProt: P03367

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.