ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4xc5C1 - ECOD Domain | ECOD

ECOD/Domains/e4xc5C1

e4xc5C1

UID: 001519202

PDB

Range: C:330-468
PDB: 4XC5 chain C(all domains)
UniProt: P04506 (all domains)
Gene: S1

Molecule: Outer capsid protein sigma-1

3D Structure

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Related Domains

Browse other domains in Reo_sigma1 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupDomain in virus attachment proteins(5092)

HH-groupDomain in virus attachment proteins(5092.1)

TT-groupDomain in virus attachment proteins(5092.1.1)

FFamilyReo_sigma1(5092.1.1.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal

+ 2 additives (Acetate, Glycerin)

AcetateACT

Pfam Families

PF01664Reo_sigma1

Reovirus viral attachment protein sigma 1

ClanCL0326Reo_sigma

External Links

ECOD PDB View: 4XC5 RCSB PDB: 4XC5 PDBe: 4XC5 UniProt: P04506

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14511

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.