ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4f2mE1 - ECOD Domain | ECOD

ECOD/Domains/e4f2mE1

e4f2mE1

UID: 000151991

PDB

Range: E:507-650
PDB: 4F2M chain E(all domains)
UniProt: Q0PKZ5 (all domains)
Gene: S

Molecule: Spike protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in CoV_S1 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCoronavirus spike protein receptor-binding domain(4169)

HH-groupCoronavirus spike protein receptor-binding domain(4169.1)

TT-groupAlpha-coronavirus spike protein receptor-binding domain(4169.1.2)

FFamilyCoV_S1(4169.1.2.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Coronavirus spike glycoprotein S1

External Links

ECOD PDB View: 4F2M RCSB PDB: 4F2M PDBe: 4F2M UniProt: Q0PKZ5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure