ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ef2B1 - ECOD Domain | ECOD

ECOD/Domains/e4ef2B1

e4ef2B1

UID: 001520175

PDB

Range: B:30-109,B:228-270
PDB: 4EF2 chain B(all domains)
UniProt: Q831K8 (all domains)
Gene: EF_2496

Molecule: Pheromone cOB1/lipoprotein, YaeC family

3D Structure

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Related Domains

Browse other domains in Lipoprotein_9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLipoprotein_9(7523.1.1.13)

Ligands

in contact, ≤ 4 Å

SelenomethionineMSE
drugDrugBank DB11142

+ 2 additives (Triethylene glycol, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL)

Triethylene glycolPGE
DrugBank DB02327

Pfam Families

PF03180Lipoprotein_9

NlpA lipoprotein

ClanCL0177PBP

External Links

ECOD PDB View: 4EF2 RCSB PDB: 4EF2 PDBe: 4EF2 UniProt: Q831K8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOLPE8

Shown in the structure viewer. Drug annotations from DrugDomain.