ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3glbB2 - ECOD Domain | ECOD

ECOD/Domains/e3glbB2

e3glbB2

UID: 001520603

PDB

Range: B:90-161,B:268-301
PDB: 3GLB chain B(all domains)
UniProt: P07774 (all domains)
Gene: catM

Molecule: HTH-type transcriptional regulator catM

3D Structure

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Related Domains

Browse other domains in LysR_substrate →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLysR_substrate(7523.1.1.15)

Ligands

in contact, ≤ 4 Å

(2Z,4Z)-HEXA-2,4-DIENEDIOIC ACIDCCU

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462
Sulfate ionSO4

Shown in the structure viewer.

Pfam Families

PF03466LysR_substrate

LysR substrate binding domain

ClanCL0177PBP

External Links

ECOD PDB View: 3GLB RCSB PDB: 3GLB PDBe: 3GLB UniProt: P07774

Downloads

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Drug annotations from DrugDomain.