ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3k1mA3 - ECOD Domain | ECOD

ECOD/Domains/e3k1mA3

e3k1mA3

UID: 001521228

PDB

Range: A:90-161,A:268-300
PDB: 3K1M chain A(all domains)
UniProt: O68014 (all domains)
Gene: benM

Molecule: HTH-type transcriptional regulator benM

3D Structure

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Related Domains

Browse other domains in LysR_substrate →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLysR_substrate(7523.1.1.15)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 2 additives (Glycerin, Imidazole)

GlycerinGOL
DrugBank DB09462
ImidazoleIMD

Pfam Families

PF03466LysR_substrate

LysR substrate binding domain

ClanCL0177PBP

External Links

ECOD PDB View: 3K1M RCSB PDB: 3K1M PDBe: 3K1M UniProt: O68014

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.