ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3k1nB2 - ECOD Domain | ECOD

ECOD/Domains/e3k1nB2

e3k1nB2

UID: 001521236

PDB

Range: B:90-161,B:268-304
PDB: 3K1N chain B(all domains)
UniProt: O68014 (all domains)
Gene: benM

Molecule: HTH-type transcriptional regulator benM

3D Structure

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Related Domains

Browse other domains in LysR_substrate →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLysR_substrate(7523.1.1.15)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 1 additive (Imidazole)

ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03466LysR_substrate

LysR substrate binding domain

ClanCL0177PBP

External Links

ECOD PDB View: 3K1N RCSB PDB: 3K1N PDBe: 3K1N UniProt: O68014

Downloads

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