ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kcdA1 - ECOD Domain | ECOD

ECOD/Domains/e4kcdA1

e4kcdA1

UID: 001521276

PDB

Range: A:3-142,A:251-292
PDB: 4KCD chain A(all domains)
UniProt: Q9R1M7 (all domains)
Gene: Grin3a

Molecule: Glutamate receptor ionotropic, NMDA 3A

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 4KCD RCSB PDB: 4KCD PDBe: 4KCD UniProt: Q9R1M7

Downloads

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