ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3m8uA4 - ECOD Domain | ECOD

ECOD/Domains/e3m8uA4

e3m8uA4

UID: 001521542

PDB

Range: A:24-39,A:181-285,A:502-531
PDB: 3M8U chain A(all domains)
UniProt: B8F653 (all domains)
Gene: hbpA

Molecule: Heme-binding protein A

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

Glutathione disulfideGDS
drugDrugBank DB03310

+ 1 additive (Malonate Ion)

Malonate IonMLI
DrugBank DB02201

Shown in the structure viewer.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 3M8U RCSB PDB: 3M8U PDBe: 3M8U UniProt: B8F653

Downloads

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Drug annotations from DrugDomain.