ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mijA1 - ECOD Domain | ECOD

ECOD/Domains/e4mijA1

e4mijA1

UID: 001521569

PDB

Range: A:152-240
PDB: 4MIJ chain A(all domains)
UniProt: Q128M1 (all domains)
Gene: Bpro_3107

Molecule: TRAP dicarboxylate transporter, DctP subunit

3D Structure

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Related Domains

Browse other domains in DctP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyDctP(7523.1.1.16)

Ligands

in contact, ≤ 4 Å

alpha-D-galacturonic acidADA
drugDrugBank DB03511
beta-D-Galactopyranuronic acidGTR
drugDrugBank DB03652

Pfam Families

Bacterial extracellular solute-binding protein, family 7

ClanCL0177PBP

External Links

ECOD PDB View: 4MIJ RCSB PDB: 4MIJ PDBe: 4MIJ UniProt: Q128M1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chloride ionCL

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.