ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mvxA2 - ECOD Domain | ECOD

ECOD/Domains/e3mvxA2

e3mvxA2

UID: 001521636

PDB

Range: A:246-470
PDB: 3MVX chain A(all domains)
UniProt: P33590 (all domains)
Gene: nikA

Molecule: Nickel-binding periplasmic protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

2-[2-[carboxymethyl(phenylmethyl)amino]ethyl-[(2-hydroxyphenyl)methyl]amino]ethanoic acidBHZ

+ 3 additives (Acetate, Sulfate ion, Glycerol)

AcetateACT
DrugBank DB14511
Sulfate ion

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 3MVX RCSB PDB: 3MVX PDBe: 3MVX UniProt: P33590

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.