ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3rgyA1 - ECOD Domain | ECOD

ECOD/Domains/e3rgyA1

e3rgyA1

UID: 001522462

PDB

Range: A:342-431,A:594-686
PDB: 3RGY chain A(all domains)
UniProt: P24627 (all domains)
Gene: LTF

Molecule: Lactotransferrin

3D Structure

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Related Domains

Browse other domains in Transferrin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyTransferrin(7523.1.1.2)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141
FE (III) IONFE
metal
(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE

Pfam Families

PF00405Transferrin

Transferrin

ClanCL0177PBP

External Links

ECOD PDB View: 3RGY RCSB PDB: 3RGY PDBe: 3RGY UniProt: P24627

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ionZN

metal

+ 1 additive (Carbonate ion)

Carbonate ionCO3
DrugBank DB14531

Shown in the structure viewer. Drug annotations from DrugDomain.