ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vr5B3 - ECOD Domain | ECOD

ECOD/Domains/e1vr5B3

e1vr5B3

UID: 001523024

PDB

Range: B:23-59,B:162-271,B:516-557
PDB: 1VR5 chain B(all domains)
UniProt: Q9X0V0 (all domains)
Gene: TM_1223

Molecule: oligopeptide ABC transporter, periplasmic oligopeptide-binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 1VR5 RCSB PDB: 1VR5 PDBe: 1VR5 UniProt: Q9X0V0

Downloads

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