ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2yjpA1 - ECOD Domain | ECOD

ECOD/Domains/e2yjpA1

e2yjpA1

UID: 001523305

PDB

Range: A:38-136,A:231-284
PDB: 2YJP chain A(all domains)
UniProt: Q5F5B5 (all domains)
Gene: NGO_2014

Molecule: PUTATIVE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, AMINO ACID

3D Structure

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Related Domains

Browse other domains in SBP_bac_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_3(7523.1.1.4)

Ligands

in contact, ≤ 4 Å

CysteineCYS
drugDrugBank DB00151
Zinc ionZN
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

PF00497SBP_bac_3

Bacterial extracellular solute-binding proteins, family 3

ClanCL0177PBP

External Links

ECOD PDB View: 2YJP RCSB PDB: 2YJP PDBe: 2YJP UniProt: Q5F5B5

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.