ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2yjpB2 - ECOD Domain | ECOD

ECOD/Domains/e2yjpB2

e2yjpB2

UID: 001523308

PDB

Range: B:39-136,B:231-284
PDB: 2YJP chain B(all domains)
UniProt: Q5F5B5 (all domains)
Gene: NGO_2014

Molecule: PUTATIVE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN, AMINO ACID

3D Structure

Loading viewer...

Related Domains

Browse other domains in SBP_bac_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_3(7523.1.1.4)

Ligands

in contact, ≤ 4 Å

CysteineCYS
drugDrugBank DB00151

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00497SBP_bac_3

Bacterial extracellular solute-binding proteins, family 3

ClanCL0177PBP

External Links

ECOD PDB View: 2YJP RCSB PDB: 2YJP PDBe: 2YJP UniProt: Q5F5B5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure