ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2zntA2 - ECOD Domain | ECOD

ECOD/Domains/e2zntA2

e2zntA2

UID: 001523366

PDB

Range: A:415-520,A:748-789
PDB: 2ZNT chain A(all domains)
UniProt: P39086 (all domains)
Gene: GRIK1

Molecule: Glutamate receptor, ionotropic kainate 1

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
(2R,3aR,6S,7R,7aR)-2-[(2S)-2-amino-2-carboxyethyl]-6-hydroxy-7-(methylamino)hexahydro-2H-furo[3,2-b]pyran-2-carboxylic acidDYH

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 2ZNT RCSB PDB: 2ZNT PDBe: 2ZNT UniProt: P39086

Downloads

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