ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mlqA1 - ECOD Domain | ECOD

ECOD/Domains/e4mlqA1

e4mlqA1

UID: 001523456

PDB

Range: A:101-197
PDB: 4MLQ chain A(all domains)
UniProt: Q8GCA8 (all domains)
Gene: hemC

Molecule: Porphobilinogen deaminase

3D Structure

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Related Domains

Browse other domains in Porphobil_deam →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyPorphobil_deam(7523.1.1.6)

Ligands

in contact, ≤ 4 Å

Dipyrromethane CofactorDPM
drugDrugBank DB04517
3-[(5S)-5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-2-oxo-2,5-dihydro-1H-pyrrol-3-yl]propanoic acid29P

Shown in the structure viewer.

Pfam Families

PF01379Porphobil_deam

Porphobilinogen deaminase, dipyromethane cofactor binding domain

ClanCL0177PBP

External Links

ECOD PDB View: 4MLQ RCSB PDB: 4MLQ PDBe: 4MLQ UniProt: Q8GCA8

Downloads

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Drug annotations from DrugDomain.