ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4pfyA1 - ECOD Domain | ECOD

ECOD/Domains/e4pfyA1

e4pfyA1

UID: 001523973

PDB

Range: A:272-515
PDB: 4PFY chain A(all domains)
UniProt: Q9X0V0 (all domains)
Gene: TM_1223

Molecule: ABC transporter substrate-binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 4PFY RCSB PDB: 4PFY PDBe: 4PFY UniProt: Q9X0V0

Downloads

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