ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4mevA2 - ECOD Domain | ECOD

ECOD/Domains/e4mevA2

e4mevA2

UID: 001525298

PDB

Range: A:152-243
PDB: 4MEV chain A(all domains)
UniProt: Q21XD7 (all domains)
Gene: Rfer_1840

Molecule: TRAP dicarboxylate transporter-DctP subunit

3D Structure

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Related Domains

Browse other domains in DctP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyDctP(7523.1.1.16)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Malonate Ion, Citric acid)

Malonate IonMLI
DrugBank DB02201
Citric acidCIT
DrugBank DB04272within 5 Å only

Shown in the structure viewer.

Pfam Families

Bacterial extracellular solute-binding protein, family 7

ClanCL0177PBP

External Links

ECOD PDB View: 4MEV RCSB PDB: 4MEV PDBe: 4MEV UniProt: Q21XD7

Downloads

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Drug annotations from DrugDomain.