ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4rn2A1 - ECOD Domain | ECOD

ECOD/Domains/e4rn2A1

e4rn2A1

UID: 001545124

PDB

Range: A:15-377
PDB: 4RN2 chain A(all domains)
UniProt: Q9BY41 (all domains)
Gene: HDAC8

Molecule: Histone deacetylase 8

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
(5R,8S,11S)-5-methyl-8-(propan-2-yl)-11-[(1E)-4-sulfanylbut-1-en-1-yl]-3-thia-7,10,14,17,21-pentaazatricyclo[14.3.1.1~2,5~]henicosa-1(20),2(21),16,18-tetraene-6,9,13-trioneL7G
Zinc ion

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 4RN2 RCSB PDB: 4RN2 PDBe: 4RN2 UniProt: Q9BY41

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.