ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jsdA3 - ECOD Domain | ECOD

ECOD/Domains/e4jsdA3

e4jsdA3

UID: 001545979

PDB

Range: A:1-38,A:143-257,A:511-549
PDB: 4JSD chain A(all domains)
UniProt: Q9WXN8 (all domains)
Gene: TM_0031

Molecule: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 4JSD RCSB PDB: 4JSD PDBe: 4JSD UniProt: Q9WXN8

Downloads

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