ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3k2oB1 - ECOD Domain | ECOD

ECOD/Domains/e3k2oB1

e3k2oB1

UID: 001546393

RepresentativePDB

Range: B:1-335
PDB: 3K2O chain B(all domains)
UniProt: Q6NYC1 (all domains)
Gene: JMJD6

Molecule: Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

3D Structure

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Related Domains

Browse other domains in JmjC, Cupin_8 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC, Cupin_8(10.12.1.101)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal
NICKEL (II) IONNI
metal

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

PF13621Cupin_8

Cupin-like domain

ClanCL0029Cupin

External Links

ECOD PDB View: 3K2O RCSB PDB: 3K2O PDBe: 3K2O UniProt: Q6NYC1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 3 additives (Acetate, Glycerin, Phosphate ion)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.