ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4x5yA2 - ECOD Domain | ECOD

ECOD/Domains/e4x5yA2

e4x5yA2

UID: 001546701

PDB

Range: A:231-427,A:460-589
PDB: 4X5Y chain A(all domains)
UniProt: O00255 (all domains)
Gene: MEN1

Molecule: Menin

3D Structure

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Related Domains

Browse other domains in Menin →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyMenin(109.4.1.76)

Ligands

in contact, ≤ 4 Å

4-methyl-1-(1H-pyrazol-4-ylmethyl)-5-[(4-{[6-(2,2,2-trifluoroethyl)thieno[2,3-d]pyrimidin-4-yl]amino}piperidin-1-yl)methyl]-1H-indole-2-carbonitrile3XW

+ 4 additives (HEPES, Sulfate ion, Dimethyl sulfoxide, …)

HEPESEPE
DrugBank DB16872

Pfam Families

Menin

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 4X5Y RCSB PDB: 4X5Y PDBe: 4X5Y UniProt: O00255

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Dimethyl sulfoxideDMS

Tetraethylene glycolPG4

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.