ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4x0yC1 - ECOD Domain | ECOD

ECOD/Domains/e4x0yC1

e4x0yC1

UID: 001548342

PDB

Range: C:25-288
PDB: 4X0Y chain C(all domains)
UniProt: P90498 (all domains)
Gene: VP1

Molecule: Major capsid protein

3D Structure

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Related Domains

Browse other domains in Polyoma_coat →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyPolyoma_coat(10.2.1.6)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal

+ 2 additives (Glycerin, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOL

Pfam Families

PF00718Polyoma_coat

Polyomavirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 4X0Y RCSB PDB: 4X0Y PDBe: 4X0Y UniProt: P90498

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.