ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e4x16D1 - ECOD Domain | ECOD

ECOD/Domains/e4x16D1

e4x16D1

UID: 001548378

PDB

Range: D:24-288
PDB: 4X16 chain D(all domains)
UniProt: P03089 (all domains)

Molecule: Major capsid protein VP1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Polyoma_coat →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyPolyoma_coat(10.2.1.6)

Ligands

in contact, ≤ 4 Å

N-acetyl-alpha-neuraminic acidSIA
drugDrugBank DB03721

+ 2 additives (Glycerin, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF00718Polyoma_coat

Polyomavirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 4X16 RCSB PDB: 4X16 PDBe: 4X16 UniProt: P03089

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.