ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ycpA1 - ECOD Domain | ECOD

ECOD/Domains/e4ycpA1

e4ycpA1

UID: 001548446

PDB

Range: A:1-315
PDB: 4YCP chain A(all domains)
UniProt: P33371 (all domains)
Gene: dusC

Molecule: tRNA-dihydrouridine synthase C

3D Structure

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Related Domains

Browse other domains in Dus →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyDus(2002.1.1.56)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (Sulfate ion)

Pfam Families

Dihydrouridine synthase (Dus)

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 4YCP RCSB PDB: 4YCP PDBe: 4YCP UniProt: P33371

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.