ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vxvA1 - ECOD Domain | ECOD

ECOD/Domains/e3vxvA1

e3vxvA1

UID: 000154863

PDB

Range: A:71-135
PDB: 3VXV chain A(all domains)
UniProt: Q9Z2D7 (all domains)
Gene: Mbd4

Molecule: Methyl-CpG-binding domain protein 4

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupDNA-binding domain(252)

HH-groupMethyl-CpG-binding domain, MBD(252.1)

TT-groupMethyl-CpG-binding domain, MBD(252.1.1)

FFamilyMBD(252.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Methyl-CpG binding domain

ClanCL0081MBD-like

External Links

ECOD PDB View: 3VXV RCSB PDB: 3VXV PDBe: 3VXV UniProt: Q9Z2D7

Downloads

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