ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4r0cC1 - ECOD Domain | ECOD

ECOD/Domains/e4r0cC1

e4r0cC1

UID: 001549198

PDB

Range: C:19-492
PDB: 4R0C chain C(all domains)
UniProt: Q0VR69 (all domains)
Gene: ydaH

Molecule: AbgT putative transporter family

3D Structure

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Related Domains

Browse other domains in ABG_transport →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupdicarboxylate/sodium symporter(3355)

HH-groupdicarboxylate/sodium symporter(3355.1)

TT-groupdicarboxylate/sodium symporter(3355.1.1)

FFamilyABG_transport(3355.1.1.3)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 2 additives (octyl beta-D-glucopyranoside, Dodecyl-beta-d-maltoside)

octyl beta-D-glucopyranosideBOG
Dodecyl-beta-d-maltosideLMT

Pfam Families

PF03806ABG_transport

AbgT putative transporter family

ClanCL0182IT

External Links

ECOD PDB View: 4R0C RCSB PDB: 4R0C PDBe: 4R0C UniProt: Q0VR69

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.