ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4s3aA2 - ECOD Domain | ECOD

ECOD/Domains/e4s3aA2

e4s3aA2

UID: 001551805

PDB

Range: A:292-404
PDB: 4S3A chain A(all domains)
UniProt: Q5SLI8 (all domains)
Gene: ispG

Molecule: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

3D Structure

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Related Domains

Browse other domains in GcpE_C →

Classification

AArchitecturea+b three layers(a.12)

XX-groupSulfite reductase hemoprotein (SiRHP), domains 2 and 4(296)

HH-groupSulfite reductase hemoprotein (SiRHP), domains 2 and 4(296.1)

TT-groupSulfite reductase hemoprotein (SiRHP), domains 2 and 4(296.1.1)

FFamilyGcpE_C(296.1.1.3)

Ligands

in contact, ≤ 4 Å

(3S)-1,3-dihydroxy-4-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}-2-methylbut-2-ylium, carbokation intermediate43Q
Iron/sulfur clusterSF4

+ 1 additive (Glycerin)

GlycerinGOL

Pfam Families

GcpE protein C-terminal domain

External Links

ECOD PDB View: 4S3A RCSB PDB: 4S3A PDBe: 4S3A UniProt: Q5SLI8

Downloads

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DrugBank DB09462within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.