ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5bmqA1 - ECOD Domain | ECOD

ECOD/Domains/e5bmqA1

e5bmqA1

UID: 001558018

PDB

Range: A:174-303
PDB: 5BMQ chain A(all domains)
UniProt: D3Q1D9 (all domains)
Gene: Snas_6095

Molecule: ErfK/YbiS/YcfS/YnhG family protein

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (1,4-Dioxane, Glycerin, Sulfate ion)

1,4-DioxaneDIO
DrugBank DB03316
GlycerinGOL
DrugBank DB09462
Sulfate ion

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 5BMQ RCSB PDB: 5BMQ PDBe: 5BMQ UniProt: D3Q1D9

Downloads

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DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.