ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4y8jV1 - ECOD Domain | ECOD

ECOD/Domains/e4y8jV1

e4y8jV1

UID: 001561470

PDB

Range: V:1-222
PDB: 4Y8J chain V(all domains)
UniProt: P25043 (all domains)
Gene: PUP1

Molecule: Proteasome subunit beta type-2

3D Structure

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Related Domains

Browse other domains in Proteasome,Pr_beta_C →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome,Pr_beta_C(210.1.1.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

PF12465Pr_beta_C

Proteasome beta subunits C terminal

External Links

ECOD PDB View: 4Y8J RCSB PDB: 4Y8J PDBe: 4Y8J UniProt: P25043

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03814

Shown in the structure viewer. Drug annotations from DrugDomain.