ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5akmA2 - ECOD Domain | ECOD

ECOD/Domains/e5akmA2

e5akmA2

UID: 001562305

PDB

Range: A:5-99
PDB: 5AKM chain A(all domains)
UniProt: P21505 (all domains)

Molecule: HOMING ENDONUCLEASE I-DMOI

3D Structure

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Related Domains

Browse other domains in LAGLIDADG_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHoming endonucleases-like(242)

HH-groupHoming endonucleases(242.1)

TT-groupHoming endonucleases(242.1.1)

FFamilyLAGLIDADG_3(242.1.1.7)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14528LAGLIDADG_3

LAGLIDADG-like domain

ClanCL0324Homing_endonuc

External Links

ECOD PDB View: 5AKM RCSB PDB: 5AKM PDBe: 5AKM UniProt: P21505

Downloads

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