ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ytbA1 - ECOD Domain | ECOD

ECOD/Domains/e4ytbA1

e4ytbA1

UID: 001564029

PDB

Range: A:44-465
PDB: 4YTB chain A(all domains)
UniProt: Q9RQJ2 (all domains)
Gene: PG_1424

Molecule: Peptidylarginine deiminase

3D Structure

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Related Domains

Browse other domains in PAD_porph →

Classification

AArchitecturea+b duplicates or obligate multimers(a.15)

XX-groupPentein(232)

HH-groupPentein(232.1)

TT-groupPentein(232.1.1)

FFamilyPAD_porph(232.1.1.4)

Ligands

in contact, ≤ 4 Å

Aspartic acidASP
drugDrugBank DB00128
L-GlutamineGLN
drugDrugBank DB00130
Azide ion

Pfam Families

PF04371PAD_porph

Porphyromonas-type peptidyl-arginine deiminase

ClanCL0197GME

External Links

ECOD PDB View: 4YTB RCSB PDB: 4YTB PDBe: 4YTB UniProt: Q9RQJ2

Downloads

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Sodium ionNA

metal

Chloride ionCL

within 5 Å only

+ 3 additives (Glycerin, Imidazole, Phosphate ion)

GlycerinGOL
DrugBank DB09462
ImidazoleIMD
DrugBank DB03366
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.