ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5c0oE2 - ECOD Domain | ECOD

ECOD/Domains/e5c0oE2

e5c0oE2

UID: 001565070

PDB

Range: E:62-254
PDB: 5C0O chain E(all domains)
UniProt: Q8GBB2 (all domains)
Gene: trmI

Molecule: tRNA (adenine(58)-N(1))-methyltransferase TrmI

3D Structure

Loading viewer...

Related Domains

Browse other domains in GCD14 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyGCD14(2003.1.5.69)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

tRNA methyltransferase complex GCD14 subunit

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5C0O RCSB PDB: 5C0O PDBe: 5C0O UniProt: Q8GBB2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure