ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3mfdB3 - ECOD Domain | ECOD

ECOD/Domains/e3mfdB3

e3mfdB3

UID: 001574404

PDB

Range: B:266-352
PDB: 3MFD chain B(all domains)
UniProt: P35150 (all domains)
Gene: dacB

Molecule: D-alanyl-D-alanine carboxypeptidase dacB

3D Structure

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Related Domains

Browse other domains in PBP5_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupPenicillin-binding protein associated domain(51)

HH-groupPenicillin-binding protein associated domain(51.1)

TT-groupPenicillin-binding protein associated domain(51.1.1)

FFamilyPBP5_C(51.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Penicillin-binding protein 5, C-terminal domain

External Links

ECOD PDB View: 3MFD RCSB PDB: 3MFD PDBe: 3MFD UniProt: P35150

Downloads

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