ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2r0tB2 - ECOD Domain | ECOD

ECOD/Domains/e2r0tB2

e2r0tB2

UID: 001574428

PDB

Range: B:3-266
PDB: 2R0T chain B(all domains)
UniProt: Q9F118 (all domains)
Gene: wbdK

Molecule: Pyridoxamine 5-phosphate-dependent dehydrase

3D Structure

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Related Domains

Browse other domains in DegT_DnrJ_EryC1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilyDegT_DnrJ_EryC1(7577.1.1.6)

Ligands

in contact, ≤ 4 Å

N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acidPGU

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01041DegT_DnrJ_EryC1

DegT/DnrJ/EryC1/StrS aminotransferase family

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 2R0T RCSB PDB: 2R0T PDBe: 2R0T UniProt: Q9F118

Downloads

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