ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2am1A1 - ECOD Domain | ECOD

ECOD/Domains/e2am1A1

e2am1A1

UID: 000159533

PDB

Range: A:99-296
PDB: 2AM1 chain A(all domains)
UniProt: Q8DNV6 (all domains)
Gene: murF

Molecule: UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein

3D Structure

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Related Domains

Browse other domains in Mur_ligase_M →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyMur_ligase_M(2004.1.1.159)

Ligands

in contact, ≤ 4 Å

2,4-DICHLORO-N-(3-CYANO-4,5,6,7-TETRAHYDRO-BENZOTHIOPHEN-2YL)-5-(MORPHOLINE-4-SULFONYL)-BENZAMIDE1LG

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08245Mur_ligase_M

Mur ligase middle domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2AM1 RCSB PDB: 2AM1 PDBe: 2AM1 UniProt: Q8DNV6

Downloads

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