ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e2gmuA2 - ECOD Domain | ECOD

ECOD/Domains/e2gmuA2

e2gmuA2

UID: 001596996

PDB

Range: A:267-388
PDB: 2GMU chain A(all domains)
UniProt: Q9F118 (all domains)
Gene: wbdK

Molecule: Putative pyridoxamine 5-phosphate-dependent dehydrase, WbdK

3D Structure

Loading viewer...

Related Domains

Browse other domains in DegT_DnrJ_EryC1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilyDegT_DnrJ_EryC1(3016.1.1.6)

Ligands

in contact, ≤ 4 Å

N-PYRIDOXYL-D-GLUTAMIC ACID-5'-MONOPHOSPHATEPDG
drugDrugBank DB04762within 5 Å only
Magnesium ionMG
metal

Shown in the structure viewer.

Pfam Families

PF01041DegT_DnrJ_EryC1

DegT/DnrJ/EryC1/StrS aminotransferase family

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 2GMU RCSB PDB: 2GMU PDBe: 2GMU UniProt: Q9F118

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.