ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2db3A1 - ECOD Domain | ECOD

ECOD/Domains/e2db3A1

e2db3A1

UID: 000160422

PDB

Range: A:227-459
PDB: 2DB3 chain A(all domains)
UniProt: P09052 (all domains)
Gene: vas

Molecule: ATP-dependent RNA helicase vasa

3D Structure

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Related Domains

Browse other domains in DEAD →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyDEAD(2004.1.1.29)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid-adenylate esterANP
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

DEAD/DEAH box helicase

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2DB3 RCSB PDB: 2DB3 PDBe: 2DB3 UniProt: P09052

Downloads

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