ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4bm9A1 - ECOD Domain | ECOD

ECOD/Domains/e4bm9A1

e4bm9A1

UID: 001607267

PDB

Range: A:142-227
PDB: 4BM9 chain A(all domains)
UniProt: O60260 (all domains)
Gene: PRKN

Molecule: E3 UBIQUITIN-PROTEIN LIGASE PARKIN

3D Structure

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Related Domains

Browse other domains in zf-RING_12 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-RING_12(376.1.1.33)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF17976zf-RING_12

RING/Ubox like zinc-binding domain

ClanCL0229RING

External Links

ECOD PDB View: 4BM9 RCSB PDB: 4BM9 PDBe: 4BM9 UniProt: O60260

Downloads

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