ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4v8sBB6 - ECOD Domain | ECOD

ECOD/Domains/e4v8sBB6

e4v8sBB6

UID: 001609785

PDB

Range: BB:716-752,BB:876-998
PDB: 4V8S chain BB(all domains)
UniProt: B8YB55 (all domains)
Gene: rpo2

Molecule: DNA-DIRECTED RNA POLYMERASE

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_6 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb2_6(1.1.2.1)

Ligands

in contact, ≤ 4 Å

Iron/sulfur clusterSF4
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00562RNA_pol_Rpb2_6

RNA polymerase Rpb2, domain 6

ClanCL0410LEF-8-like

External Links

ECOD PDB View: 4V8S RCSB PDB: 4V8S PDBe: 4V8S UniProt: B8YB55

Downloads

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