ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4v8sBD2 - ECOD Domain | ECOD

ECOD/Domains/e4v8sBD2

e4v8sBD2

UID: 001609788

PDB

Range: BD:2-36,BD:159-263
PDB: 4V8S chain BD(all domains)
UniProt: B8YB56 (all domains)
Gene: rpo3

Molecule: DNA-DIRECTED RNA POLYMERASE SUBUNIT D

3D Structure

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Related Domains

Browse other domains in RNA_pol_L →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDCoH-like(305)

HH-groupRBP11-like subunits of RNA polymerase(305.1)

TT-groupRBP11-like subunits of RNA polymerase(305.1.1)

FFamilyRNA_pol_L(305.1.1.1)

Ligands

in contact, ≤ 4 Å

Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01193RNA_pol_L

RNA polymerase Rpb3/Rpb11 dimerisation domain

ClanCL0509RBP11-like

External Links

ECOD PDB View: 4V8S RCSB PDB: 4V8S PDBe: 4V8S UniProt: B8YB56

Downloads

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