ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3kv5D1 - ECOD Domain | ECOD

ECOD/Domains/e3kv5D1

e3kv5D1

UID: 001616925

PDB

Range: D:99-372
PDB: 3KV5 chain D(all domains)
UniProt: Q6ZMT4 (all domains)
Gene: KDM7A

Molecule: JmjC domain-containing histone demethylation protein 1D

3D Structure

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Related Domains

Browse other domains in JmjC, Cupin_8 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC, Cupin_8(10.12.1.101)

Ligands

in contact, ≤ 4 Å

FE (II) IONFE2
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

PF13621Cupin_8

Cupin-like domain

ClanCL0029Cupin

External Links

ECOD PDB View: 3KV5 RCSB PDB: 3KV5 PDBe: 3KV5 UniProt: Q6ZMT4

Downloads

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