ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2hklA1 - ECOD Domain | ECOD

ECOD/Domains/e2hklA1

e2hklA1

UID: 000164443

PDB

Range: A:339-466
PDB: 2HKL chain A(all domains)
UniProt: Q3Y185 (all domains)
Gene: HMPREF0351_12555

Molecule: L,D-TRANSPEPTIDASE

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 2HKL RCSB PDB: 2HKL PDBe: 2HKL UniProt: Q3Y185

Downloads

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