ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2y0sD1 - ECOD Domain | ECOD

ECOD/Domains/e2y0sD1

e2y0sD1

UID: 001647180

PDB

Range: D:2-36,D:159-264
PDB: 2Y0S chain D(all domains)
UniProt: B8YB56 (all domains)
Gene: rpo3

Molecule: DNA-DIRECTED RNA POLYMERASE SUBUNIT D

3D Structure

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Related Domains

Browse other domains in RNA_pol_L →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDCoH-like(305)

HH-groupRBP11-like subunits of RNA polymerase(305.1)

TT-groupRBP11-like subunits of RNA polymerase(305.1.1)

FFamilyRNA_pol_L(305.1.1.1)

Ligands

in contact, ≤ 4 Å

FE3-S4 CLUSTERF3S

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01193RNA_pol_L

RNA polymerase Rpb3/Rpb11 dimerisation domain

ClanCL0509RBP11-like

External Links

ECOD PDB View: 2Y0S RCSB PDB: 2Y0S PDBe: 2Y0S UniProt: B8YB56

Downloads

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