ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2pmpA1 - ECOD Domain | ECOD

ECOD/Domains/e2pmpA1

e2pmpA1

UID: 000165575

PDB

Range: A:1-160
PDB: 2PMP chain A(all domains)
UniProt: Q9CAK8 (all domains)
Gene: ISPF

Molecule: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

3D Structure

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Related Domains

Browse other domains in YgbB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupBacillus chorismate mutase-like(301)

HH-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5)

TT-group2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF(301.5.1)

FFamilyYgbB(301.5.1.1)

Ligands

in contact, ≤ 4 Å

Cytidine-5'-MonophosphateC5P
drugDrugBank DB03403
Chloride ionCL
Zinc ionZN

Pfam Families

YgbB family

External Links

ECOD PDB View: 2PMP RCSB PDB: 2PMP PDBe: 2PMP UniProt: Q9CAK8

Downloads

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metal

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.