ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4gz8A1 - ECOD Domain | ECOD

ECOD/Domains/e4gz8A1

e4gz8A1

UID: 001659189

PDB

Range: A:27-520
PDB: 4GZ8 chain A(all domains)
UniProt: O08665 (all domains)
Gene: Sema3a

Molecule: Semaphorin-3A

3D Structure

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Related Domains

Browse other domains in Sema →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilySema(5.1.4.12)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
Calcium ionCA
metal

+ 1 additive (Acetate)

Pfam Families

Sema domain

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 4GZ8 RCSB PDB: 4GZ8 PDBe: 4GZ8 UniProt: O08665

Downloads

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AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.