ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vduE1 - ECOD Domain | ECOD

ECOD/Domains/e2vduE1

e2vduE1

UID: 000166516

PDB

Range: E:66-286
PDB: 2VDU chain E(all domains)
UniProt: Q12009 (all domains)
Gene: TRM8

Molecule: TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE

3D Structure

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Related Domains

Browse other domains in Methyltransf_4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_4(2003.1.5.23)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02390Methyltransf_4

Putative methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2VDU RCSB PDB: 2VDU PDBe: 2VDU UniProt: Q12009

Downloads

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