ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2gmsB2 - ECOD Domain | ECOD

ECOD/Domains/e2gmsB2

e2gmsB2

UID: 001667839

PDB

Range: B:267-388
PDB: 2GMS chain B(all domains)
UniProt: Q9F118 (all domains)
Gene: wbdK

Molecule: Putative pyridoxamine 5-phosphate-dependent dehydrase, Wbdk

3D Structure

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Related Domains

Browse other domains in DegT_DnrJ_EryC1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilyDegT_DnrJ_EryC1(3016.1.1.6)

Ligands

in contact, ≤ 4 Å

[4-(DIHYDROXYMETHYL)-5-HYDROXY-6-METHYLPYRIDIN-3-YL]METHYL DIHYDROGEN PHOSPHATEP0P
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01041DegT_DnrJ_EryC1

DegT/DnrJ/EryC1/StrS aminotransferase family

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 2GMS RCSB PDB: 2GMS PDBe: 2GMS UniProt: Q9F118

Downloads

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